Quasispecies | PyCellChemistry documentation index source code: src/Quasispecies.py |
#---------------------------------------------------------------------------
#
# Quasispecies.py: demonstration of quasispecies evolutionary dynamics
# using binary strings, book chapter 7
#
# usage: python quasispecies.py [ <mp> <histfile> ]
# where:
# mp is the proportion of mutations with respect to the error threshold
# histfile is the name of an output file that will contain the histogram
# of species at the end of the simulation, grouped by their distance to
# the optimum (number of bits that differ from the optimum sequence
# (here '1111111111')
#
# by Lidia Yamamoto, Kraainem, Belgium, July 2013
#
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
#
# Copyright (C) 2015 Lidia A. R. Yamamoto
# Contact: http://www.artificial-chemistries.org/
#
# This file is part of PyCellChemistry.
#
# PyCellChemistry is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# version 3, as published by the Free Software Foundation.
#
# PyCellChemistry is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with PyCellChemistry, see file COPYING. If not, see
# http://www.gnu.org/licenses/
#
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Generated automatically by pydoc, July 10, 2015
Generated automatically by pydoc, July 10, 2015