#---------------------------------------------------------------------------
#
# HighOrderChem.py:
#
# a simplified high-order chemistry in which the rules are written as
# strings containing a python method call. these strings are inserted
# into a multiset of rules that can in principle be operated upon like
# other multisets of molecules, although at this stage this is not
# done yet.
#
# - rules must have the form function(args), where function is a python
# function call and args are the parameters for the function
# - rules must return a list of products of the chemical reaction
#
# by Lidia Yamamoto, Belgium, May 2014
#
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
#
# Copyright (C) 2015 Lidia A. R. Yamamoto
# Contact: http://www.artificial-chemistries.org/
#
# This file is part of PyCellChemistry.
#
# PyCellChemistry is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# version 3, as published by the Free Software Foundation.
#
# PyCellChemistry is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with PyCellChemistry, see file COPYING. If not, see
# http://www.gnu.org/licenses/
#

Modules
		numpy re sys

Classes
		HighOrderChem class HighOrderChem Methods defined here: __init__(self) initialize empty data and rule multisets is_effective(self, educts, products) true if the reaction defined by educts --> products is effective, that is the product multiset is different from the educt multiset isrule(self, mol) true if molecule 'mol' contains a reaction rule of the form function(args), where function is a python function call and args are the parameters for the function iterate(self) run one iteration of high-order algorithm: pick a random reaction rule, fill its binding sites with as many molecules as needed, and fire it. returns a triple (r, e, p) where r is the rule that has been fired, 'e' is the educt list and 'p' is the product list

Generated automatically by pydoc, July 10, 2015

Generated automatically by pydoc, July 10, 2015