#---------------------------------------------------------------------------
#
# Disperser.py: implementation of Thomas Meyer's disperser protocol on
# a fixed (example) network topology.
#
# This protocol implements a discretized mass-conserving stochastic
# diffusion process over an arbitrary network of interconnected computers.
# Here an example network with 4 nodes is shown.
#
# References:
#
# T. Meyer and C. Tschudin. Chemical networking protocols. Proc. 8th
# ACM Workshop on Hot Topics in Networks (HotNets-VIII), Oct. 2009.
#
# T. Meyer, L. Yamamoto, and C. Tschudin. An artificial chemistry
# for networking. Bio-Inspired Computing and Communication, volume
# 5151 of LNCS, pages 45-57. Springer, 2008.
#
# Python implementation by Lidia Yamamoto, Belgium, June 2013
#
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
#
# Copyright (C) 2015 Lidia A. R. Yamamoto
# Contact: http://www.artificial-chemistries.org/
#
# This file is part of PyCellChemistry.
#
# PyCellChemistry is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# version 3, as published by the Free Software Foundation.
#
# PyCellChemistry is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with PyCellChemistry, see file COPYING. If not, see
# http://www.gnu.org/licenses/
#

Modules
		numpy sys

Classes
		Disperser class Disperser Methods defined here: __init__(self) create networked topology inside single reaction vessel: multiple vessels are mimicked via different groups of molecular species mkreactions(self, topo) constructs the list of reactions (with their catalysts) automatically for a given topology 'topo'; 'topo' is a list of links between 2 nodes (reactors); each link is described by a pair [id1, id2] of node ids identifying the 2 nodes to be interconnected. CAUTION: only works with node ids made of single digits!! run(self, finalvt) run the disperser protocol until simulation time finalvt

Generated automatically by pydoc, July 10, 2015

Generated automatically by pydoc, July 10, 2015