#---------------------------------------------------------------------------
#
# ReactionParser.py: parser for chemical reactions in text format, such as:
#
# A + 2 B --> 3 C , k=2.49
#
# by Lidia Yamamoto, Univ. Basel, Switzerland, January 2010
# June 2013: adapted to the PyCellChemistry package
#
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
#
# Copyright (C) 2015 Lidia A. R. Yamamoto
# Contact: http://www.artificial-chemistries.org/
#
# This file is part of PyCellChemistry.
#
# PyCellChemistry is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# version 3, as published by the Free Software Foundation.
#
# PyCellChemistry is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with PyCellChemistry, see file COPYING. If not, see
# http://www.gnu.org/licenses/
#

Modules
		numpy sys

Classes
		ReactionParser class ReactionParser Methods defined here: parse_file(self, fname) open and parse input file fname parse_input(self, infile) parse input file containing multiple chemical reactions, one per line. 'infile' is the file descriptor for the open input file parse_line(self, line) parse string containing chemical reaction parse_molecules(self, mollist) parse educt or product multiset given as a list of strings containing the molecule name and an optional stoichiometric coefficient, e.g. [ 'a', '2 fox', '4 b1' ] parse_stdin(self) parse standard input (stdin)

Generated automatically by pydoc, July 10, 2015

Generated automatically by pydoc, July 10, 2015